PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA07g18620
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 431aa    MW: 46805.4 Da    PI: 9.3996
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA07g18620genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.4e-05197219223
                 EETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                 +C++Cg+ F  ++ L+ H  + H
  CA07g18620 197 TCHKCGEQFGKWEALEEHHLSkH 219
                 7*****************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280198219IPR007087Zinc finger, C2H2
SuperFamilySSF563991.73E-21221429No hitNo description
Gene3DG3DSA:3.90.228.108.4E-9232426IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MGEKKNMPTV WFSLKKTLHC KSDQSDVHDP KTRKQLSAIL TKKGGGGRSG CSRSIANLKD  60
VIHGSKRHLD KPPSCSPRSI GSSEFLNPIT HEVILSNSRC ELKITSFNGF QESANGGGXG  120
GITNGGSTFV GTLRPGTPGP GGHPTMHYFN SGCRNTVATP TRRSASFLVD KEGHGSFPCK  180
PTRHSLDNDV NGTSGVTCHK CGEQFGKWEA LEEHHLSKHA VSELLEGDSS RKIVEIICRS  240
SWLKSESQVG RIERVLKVHN TQKTLARFEE YREMVKSKAS KLPKKHPRCI ADGNELLRFY  300
GTTLACGLGM NGSCSLCISD KCCVCRIIRN GFSTKKELKG GIGVFTTSTS GSAYECIEMS  360
KEDPSLRKAL IVCRVVAGRV HRPLENIQEM AGQTGFDSLA GKVGVYSNIE ELYLLNPKAL  420
LPCFVVICKA *
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU5609000.0EU560900.1 Capsicum annuum clone DEG190-B transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016581329.10.0PREDICTED: uncharacterized protein LOC107878739
TrEMBLB2CZJ40.0B2CZJ4_CAPAN; Transcription factor
STRINGPGSC0003DMT4000494910.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22442235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.11e-171C2H2 family protein